To run a Plugin that calls to the R statistical computing environment: For these plugins to work, R must first be installed and setup with the appropriate R packages.

Please note some plugins utilize the R statistical computing environment to produce results. Installing the R statistical computing environment As new plugins become available, they will be posted for download from the FlowJo Exchange website, which can be accessed from within FlowJo under the Plugins Menu.Restart FlowJo. Your plugins should now appear listed in the Plugins menu.If you do not see individual plugins listed within the Plugins menu following installation, you may need to tell FlowJo the location of the plugins folder by specifying the folder’s file path in the Diagnostics section of FlowJo’s Preferences (FlowJo / Preferences / Diagnostics).

(Workspace Tab –> Populations Band –> Plugins menu)

Plugin actions can be accessed and initiated from within FlowJo under the Plugins Menu.

Add your plugin of interest to the plugins folder on your machine, and restart FlowJo:.

On a Mac, it is typical to create a plugins folder in the “Applications”. On a Windows computer this folder will already exist within the “FlowJo_v10.x” folder in the “Program Files”.

Create a folder named “plugins” on your computer.

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